No datasets match
  1. 1.
    atSNP::encode_motif
    A motif library containing 2065 motifs downloaded from http://compbio.mit.edu/encode-motifs/motifs.txt.
    json| rda| rds
    list
  2. 2.
    atSNP::encode_motifinfo
    The information for the motif library downloaded from http://compbio.mit.edu/encode-motifs/motifs.txt.
    json| rda| rds
    character
  3. 3.
    atSNP::jaspar_motif
    A motif library containing 593 motifs downloaded from http://jaspar.genereg.net/html/DOWNLOAD/JASPAR_CORE/pfm/nonredundant/pfm_all .txt.
    json| rda| rds
    list
  4. 4.
    atSNP::jaspar_motifinfo
    The information for the motif library downloaded from http://jaspar.genereg.net/html/DOWNLOAD/JASPAR_CORE/pfm/nonredundant/pfm_all .txt.
    json| rda| rds
    character
  5. 5.
    atSNP::motif_library
    A sample motif library.
    csv| json| rda| rds
    list
  6. 6.
    atSNP::motif_match
    Composit logo plotting input containing motif scores, the matching subsequences and the augmented matching subsequences on SNP and reference allele
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1 x 35
  7. 7.
    atSNP::motif_scores
    Scores for the sample snp data computed based on the motif data.
    json| rda| rds
    list
  8. 8.
    atSNP::prior
    Default stationary distribution for nucleotide sequences in the reference genome.
    json| rda| rds
    numeric
  9. 9.
    atSNP::snp_tbl
    A data frame for SNP information.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2 x 5
  10. 10.
    atSNP::snpInfo
    A data set for SNP information.
    json| rda| rds
    list
  11. 11.
    atSNP::transition
    Default transition probability matrix for nucleotide sequences in the reference genome.
    csv| json| rda| rds
    matrix|4 x 4